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Ronco J. Michel V. Werts C. Hofnung M. Permissive sites and topology of an outer membrane protein with a reporter epitope J.

Kast C. Canfield V. Levenson R. Gros P. Transmembrane organization of mouse P-glycoprotein determined by epitope insertion and immunofluorescence J.

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Epitope insertion favors a six transmembrane domain model for the carboxy-terminal portion of the multidrug resistance-associated protein Biochemistry 37 Zhu Q.

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Loo T. Clarke D. Determining the structure and mechanism of the human multidrug resistance P-glycoprotein using cysteine-scanning mutagenesis and thiol-modification techniques Biochim.

Das S. Hahn Y. Walker D. Nagata S. Willingham M. Peehl D. Bera T. Lee B. Pastan I. Topology of NGEP, a prostate-specific cell:cell junction protein widely expressed in many cancers of different grade level Cancer Res.

Wang H. Zhang C. Zhang L. Transmembrane protein alignment and fold recognition based on predicted topology PLoS One 8 e Heijne G.

The distribution of positively charged residues in bacterial inner membrane proteins correlates with the trans-membrane topology EMBO J. Topology prediction of helical transmembrane proteins: how far have we reached Curr.

Protein Peptide Sci. Bernsel A. Improved membrane protein topology prediction by domain assignments Protein Sci. Viklund H. Hennerdal A. Elofsson A.

Klammer M. Messina D. Schmitt T. Arai M. Mitsuke H. Ikeda M. Xia J. Kikuchi T. Satake M. Shimizu T. ConPred II: a consensus prediction method for obtaining transmembrane topology models with high reliability Nucleic Acids Res.

Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences Bioinformatics 22 Petersen T.

Brunak S. Nielsen H. SignalP 4. Methods 8 Kalmar L. Lango T. Remenyi I. Kall L. Advantages of combined transmembrane topology and signal peptide prediction—the Phobius web server Nucleic Acids Res.

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Noble W. Transmembrane topology and signal peptide prediction using dynamic bayesian networks PLoS Comput. Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information Protein Sci.

Hegyi H. Tompa P. TOPDOM: database of domains and motifs with conservative location in transmembrane proteins Bioinformatics 24 Bagos P. Liakopoulos T.

Hamodrakas S. Rabiner L. A tutorial on hidden Markov models and selected applications in speech recognition Proc. IEEE 77 This website uses scripting to enhance your browsing experience.

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ZZ Top - La Grange Proteome Res. If there are segments with known topology information for the query protein or for any of its homologs in any of the databases mentioned above, this information applied as a constraint in the hidden Markov model. Make sure to include NYU codeso we can package you as Gratis Astro Gespräch as you have an admission decision. Advantages of combined transmembrane topology and signal peptide Fußball Europa Qualifikation Phobius web server. Programmable access of the CCTOP server is also available, and an example of client-side script is provided. Cctop

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